Click to run the analysis =>   (a new page will open for each analysis)

What to analyse ?

small dummy dataset small dummy dataset with aggregation of LBFs example with SNP level analysis example with genes, HLA, sub-phenotypes my own data to upload below

Options:

Click for advanced options

Perform the eigen decomposition on the	Correlation matrix [for 'understanding'] Covariation matrix [for 'prediction']
Add a dummy case/control variable ?	No      Yes, a 'dummyCC' variable is added automatically

Aggregate LBF ?

No      Yes, the map is provided below

Advanced options:

LBF type	Observed LLR : case-ness (default) Observed LLR : this-ness Expected LLR : case-ness Expected LLR : this-ness Pooled (for testing purposes)
Perform the PCA on...	Cases and controls    Cases only
Mean.Var outputs	No      Yes

Input/Output options:

Upload data using:	textarea(s)      file(s) on my hard-drive
Field delimiter :	comma ',' semicolon ';' tab
Code for missing values :	dot '.' double zeros '00'

Enter/modify genotypes in the area below:

Upload genotypes:    Example : genotypes

Enter/modify map below:

Upload map:     Example : map

Click to run the analysis =>   (a new page will be opened for each analysis)

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