Taxonomy3 multivariate analysis of large case/control datasets including several variable types covering all genetic variables, genomic variables, and most sub-phenotypes:

Variable type	Example
Genetic, genomics variables	SNPs, HLA, Alu, repeats, expression levels, etc ...
Binary, Categorical	gender, ethnicity, disease subtype, etc, ...
Normally distributed	many biomarkers: BMI, most blood tests, disease severity, age, etc...
Exponentially distributed	time to event: time to exacerbation, etc....
Poisson distribution	number of events: number of relapses, etc...

In addition, this application provides:

• Case/control permutation capabilities, for the investigation of the magnitude of signal providing easy-to-interpret 'p-values'
  
• Multivariate predictions: true positive and false positive rates (ROC curves), and individual prediction of case/control status

A graphic user interface allows to easily upload, edit and analyse your data. Many analysis and graph options are provided. Example datasets are included. Several thousands of variables can be analyzed in a few minutes on a typical off-the-shelf computer.

Interested? Want to see more before downloading?
     Check out our online installation and help pages for this application here: on-line help.

 

Download version 1.2 (March 2008)

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Windows/Unix: This application can be installed and run on any machine as long as the latest Java Runtime Environment (JRE) v1.6 is installed (it is installed by default on most Windows machines). If needed, you can download and update your JRE here : http://www.java.com/ .

If you have JRE 1.5 and cannot upgrade to JRE 1.6 for some reason, please download the version compatible with JRE 1.5. Some minor functionalities are unavailble with the version compatible with JRE v1.5.

Mac OS X: Tiger (X.4) and Leopard (X.5) come with the Java Runtime Environment (JRE) v1.5 pre-installed. For now (Jan 08), it seems that only Leopard advanced users can upgrade to JRE v1.6 (see http://developer.apple.com/java/ ). Please download the version compatible with your system. Some minor functionalities are unavailble with the version compatible with JRE v1.5.

Download version for latest JRE (v1.6)     Windows self extracting installer   Unix JAR installer   Mac OS X Leopard JAR installer

Download version for older JRE (v1.5)     Windows self extracting installer   Unix JAR installer   Mac OS X Tiger and Leopard JAR installer

Installation: Download and execute (double click) the installer: it is either a Windows executable or an executable Java Archive (JAR). The installer will ask you where to install the program, examples and source code. Shortcuts will be created in Windows start menu. An un-installer is provided.

More information can be found on our installation and help pages for this application here: on-line help.

What's new in this version ?    - If upgrading, please uninstall previous version first -

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Screenshots

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